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I've done it quite a few times and once I change the consistency (specifically of a red 2G) they have, so far, all stayed intact after retesting

Inconsistency does have to do more with showing than breeding, but inconsistent horses are a bit more likely to produce inconsistent foals. They do, many times, have consistent foals, and consistent horses may produce inconsistent foals.

The reason that it affects the results of the Breeding Ability test is because inconsistency affects the PT of the foal, lowering it by about 4-5 tenths of a point. If you GMT her consistent you will have to redo the Performance Evaluation, and the breeding ability test. You will definitely notice the jump in her PT score. Her inconsistency not only lowers her own PT, but if she produces many inconsistent foals, it would lower her Average Foal PT, making her a poorer brood mare than she would otherwise be.

I think the mare may be at least as good as. The dad is a low b, I believe, so even if she is slightly worse normal breeding advice shoudn't be a problem

Try just the inconsistency before you buy a boost token. ;)